James A. Fellows Yates

Introduction to Ancient Metagenomics Textbook

Introduction to Ancient Metagenomics textbook: spaam-community.org/intro-to-ancient-metagenomics-book “Focusing on host-associated ancient metagenomics, readers will learn the main …

james-a.-fellows-yates

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

TAXPASTA is a standalone command-line tool written in Python that aims to standardise the diverse range of metagenomic profiler output formats to simple tabular formats that are …

moritz-e.-beber

Natural Products from Reconstructed Bacterial Genomes of the Middle and Upper Paleolithic

Major advances over the past decade in the field of ancient DNA are providing access to past paleogenomic diversity, but the diverse functions and biosynthetic capabilities of this …

martin-klapper

nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling

Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and …

sofia-stamouli

Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager

The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity in the size of laboratories and …

james-a.-fellows-yates

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen …

james-a.-fellows-yates