nf-core/coproID v2.0: An improved pipeline for the identification of (palaeo)faecal depositors
meriam-van-os
Introduction to Ancient Metagenomics textbook: spaam-community.org/intro-to-ancient-metagenomics-book “Focusing on host-associated ancient metagenomics, readers will learn the main …
TAXPASTA is a standalone command-line tool written in Python that aims to standardise the diverse range of metagenomic profiler output formats to simple tabular formats that are …
Major advances over the past decade in the field of ancient DNA are providing access to past paleogenomic diversity, but the diverse functions and biosynthetic capabilities of this …
Metagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and …
sam2lca is a program performing reference sequence disambiguation for reads mapping to multiple reference sequences in a shotgun metagenomics sequencing dataset. To do so, it takes …
DNA de novo assembly can be used to reconstruct longer stretches of DNA (contigs), including genes and even genomes, from short DNA sequencing reads. Applying this technique to …
Loss of gut microbial diversity in industrial populations is associated with chronic diseases, underscoring the importance of studying our ancestral gut microbiome. However, …
The broadening utilisation of ancient DNA to address archaeological, palaeontological, and biological questions is resulting in a rising diversity in the size of laboratories and …
Ancient DNA and RNA are valuable data sources for a wide range of disciplines. Within the field of ancient metagenomics, the number of published genetic datasets has risen …
SourcePredict is a Python package distributed through Conda, to classify and predict the origin of metagenomic samples, given a reference dataset of known origins, a problem also …