Publications

Maxime Borry, Alexander Huebner, Adam B Rohrlach, Christina G Warinner. PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly. bioRxiv, 2021.

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James A. Fellows Yates, Thiseas C. Lamnidis, Maxime Borry, Aida Andrades Valtueña, Zandra Fagernäs, Stephen Clayton, Maxime U. Garcia, Judith Neukamm, Alexander Peltzer. Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. PeerJ, 2021.

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James A. Fellows Yates, Aida Andrades Valtueña, Åshild J. Vågene, Becky Cribdon, Irina M. Velsko, Maxime Borry, Miriam J. Bravo-Lopez, Antonio Fernandez-Guerra, Eleanor J. Green, Shreya L. Ramachandran, Peter D. Heintzman, Maria A. Spyrou, Alexander Hübner, Abigail S. Gancz, Jessica Hider, Aurora F. Allshouse, Valentina Zaro, Christina Warinner. Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 2021.

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Maxime Borry et al. CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ, 2020.

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Maxime Borry. Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification. Journal of Open Source Software, 2019.

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