M Borry, A Forsythe, A Andrades Valtueña, A Hübner, A Ibrahim, A Quagliariello, AE White, A Kocher, ÅJ Vågene, BP Bartholdy, D Spurīte, GY Ponce-Soto, G Neumann, IT Huang, I Light, IM Velsko, I Jackson, J Frangenberg, JG Serrano, J Fumey, KT Özdoğan, KE Blevins, KG Daly, M Lopopolo, M Moraitou, M Michel, M van Os, MJ Bravo-Lopez, MS Sarhan, ND Dagtas, N Oskolkov, OS Smith, O Lebrasseur, P Rozwalak, R Eisenhofer, S Wasef, SL Ramachandran, V Vanghi, C Warinner, JA Fellows Yates.
Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT.
F1000Research,
2023.
Martin Klapper, Alexander Hübner, Anan Ibrahim, Ina Wasmuth, Maxime Borry, Veit G. Haensch, Shuaibing Zhang, Walid K. Al-Jammal, Harikumar Suma, James A. Fellows Yates, Jasmin Frangenberg, Irina M. Velsko, Somak Chowdhury, Rosa Herbst, Evgeni V. Bratovanov, Hans-Martin Dahse, Therese Horch, Christian Hertweck, Manuel Ramon González Morales, Lawrence Guy Straus, Ivan Vilotijevic, Christina Warinner, Pierre Stallforth.
Natural Products from Reconstructed Bacterial Genomes of the Middle and Upper Paleolithic.
Science,
2023.
Marsha C. Wibowo, Zhen Yang, Maxime Borry, Alexander Hübner, Kun D. Huang, Braden T. Tierney, Samuel Zimmerman, Francisco Barajas-Olmos, Cecilia Contreras-Cubas, Humberto García-Ortiz, Angélica Martínez-Hernández, Jacob M. Luber, Philipp Kirstahler, Tre Blohm, Francis E. Smiley, Richard Arnold, Sonia A. Ballal, Sünje Johanna Pamp, Julia Russ, Frank Maixner, Omar Rota-Stabelli, Nicola Segata, Karl Reinhard, Lorena Orozco, Christina Warinner, Meradeth Snow, Steven LeBlanc, Aleksandar D. Kostic.
Reconstruction of ancient microbial genomes from the human gut.
Nature,
2021.
James A. Fellows Yates, Thiseas C. Lamnidis, Maxime Borry, Aida Andrades Valtueña, Zandra Fagernäs, Stephen Clayton, Maxime U. Garcia, Judith Neukamm, Alexander Peltzer.
Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.
PeerJ,
2021.
James A. Fellows Yates, Aida Andrades Valtueña, Åshild J. Vågene, Becky Cribdon, Irina M. Velsko, Maxime Borry, Miriam J. Bravo-Lopez, Antonio Fernandez-Guerra, Eleanor J. Green, Shreya L. Ramachandran, Peter D. Heintzman, Maria A. Spyrou, Alexander Hübner, Abigail S. Gancz, Jessica Hider, Aurora F. Allshouse, Valentina Zaro, Christina Warinner.
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Scientific Data,
2021.