Maxime Borry, PhD
  • Bio
  • Papers
  • Experience
  • Projects
  • Posts
  • Courses
ESC

Searching...

No results found

↑↓ Navigate ↵ Select
Powered by Hugo Blox
  • Projects
    • Bike Power Pacer
    • coGSEA
    • Dixit Diderot
    • Meetdock
    • Phylogeny of the Anacyclus genus
  • Publications
    • De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag
    • nf-core/coproID v2.0: An improved pipeline for the identification of (palaeo)faecal depositors
    • Introduction to Ancient Metagenomics Textbook
    • Facilitating Accessible, Rapid, and Appropriate Processing of Ancient Metagenomic Data with AMDirT
    • TAXPASTA: TAXonomic Profile Aggregation and STAndardisation
    • Natural Products from Reconstructed Bacterial Genomes of the Middle and Upper Paleolithic
    • nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling
    • sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files
    • PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly
    • Reconstruction of ancient microbial genomes from the human gut
    • Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager
    • Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir
    • CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content
    • Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification
  • Posts
    • Using Python to solve the Monty Hall problem
    • A new E-score for KrakenUniq
    • noSQL: when it's too big for a dictionary
    • Making Interactive maps in Python using GeoJSON and GitHub
  • Slides
    • Slides
  • Courses

nf-core/coproID v2.0: An improved pipeline for the identification of (palaeo)faecal depositors

Mar 15, 2026·
Meriam van Os
,
Maxime Borry
· 0 min read
Code PDF DOI
publication
Last updated on Mar 15, 2026
← De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag Aug 1, 2026
Introduction to Ancient Metagenomics Textbook Sep 1, 2024 →

© 2026 Maxime Borry, PhD. This work is licensed under CC BY NC ND 4.0